Scaffold Ga0114350_1011099

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1011099
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7740
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034546	Metagenome / Metatranscriptome	174	Y
F057945	Metagenome	135	Y
F074392	Metagenome / Metatranscriptome	119	Y
F095154	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_101109912	F057945	N/A	MDRNLLNDRTHYFDVNTGKIVGSANKLALLEIFIAVVYTGQYTFTLDDEKHLGQYINLDFAKRAVEFFWEREGRTLLAGPPPFGTDTF*
Ga0114350_101109920	F074392	AGGAG	MNNELLEQLALKTGGSYFPSVFHHYQRDYVLHVLSEIHDVFQKQQFDGYAIDFWDDIVQHFQLDNYEIEKLLKNNT*
Ga0114350_10110995	F095154	GGAG	MYTCDGRKFKTLRAAVVYMKAEFKRTGVASFTVEPVVVLNKNPGYIAYLAKGMTL*
Ga0114350_10110997	F034546	AGGAG	MRNMKLKYDAQFSAEDIAEATNGLGATKLKPRKAKAQACRVKSSKGFVRGTNGFAEGYPRKVFV*