Scaffold Ga0114350_1007587

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1007587
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6670
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia → Planctomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002540	Metagenome / Metatranscriptome	550	Y
F003377	Metagenome / Metatranscriptome	490	Y
F012767	Metagenome	277	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_100758710	F003377	GGAGG	VTDATKDTLYAALRDYGFSVVVALAAGWVLRNDVLIPLVEEHRVFVRSLSETQSEISKAVTEQTKLLYEMKHMRENP*
Ga0114350_10075873	F012767	GGA	MRGDTATISLTAFRTDWATHMPMRALCERWTISRDQVIRLAVLWQLPRRHDRKLRAKPVRQRDPTTTEIRDACLQIQATWSDDNREDRHVTKTRHVSIQRIPLDHETKEAAGYDGDADLWEANR*
Ga0114350_10075875	F002540	AGGAGG	MPDYGATPQELEQYGNGLNLWQSLMLLQRWAPLIGYGQRFVNEADPYKKGLIVGDMAEWAASQTRAQADDEFVRLLANMVKTKEGEALVRWILQQAEAVR*