Basic Information | |
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Taxon OID | 3300008116 Open in IMG/M |
Scaffold ID | Ga0114350_1006314 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16183 |
Total Scaffold Genes | 42 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (78.57%) |
Novel Protein Genes | 10 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
Associated Families | 10 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000808 | Metagenome / Metatranscriptome | 882 | Y |
F005092 | Metagenome / Metatranscriptome | 412 | Y |
F007115 | Metagenome / Metatranscriptome | 357 | Y |
F007363 | Metagenome / Metatranscriptome | 352 | Y |
F013526 | Metagenome / Metatranscriptome | 270 | Y |
F015730 | Metagenome / Metatranscriptome | 252 | Y |
F016958 | Metagenome / Metatranscriptome | 243 | Y |
F017484 | Metagenome / Metatranscriptome | 240 | Y |
F021288 | Metagenome / Metatranscriptome | 219 | Y |
F049499 | Metagenome | 146 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114350_100631412 | F017484 | N/A | MSIEIFRLNENGAGWVDIEDATTAELLDLELAIVTKAEVKMLCFKCHVEIPRGNVCVNHKNVRGGIYLD* |
Ga0114350_100631413 | F013526 | AGGAGG | LTKKNVLISFVTDADTDLQAVFNLNKIMQKLSDDELEKFNAFEVLDVE* |
Ga0114350_100631415 | F015730 | AGGAG | MLSQNTLDKIVYEYQHGGVKNYHPEISMSERKALLKYLFSLPTYCSCCVKG* |
Ga0114350_100631422 | F007363 | AGGA | MRGYSIVDLLVDQYYAPTSLRRRFNGGIINFAEKREDTYPPEGWEHFAIRYRPTGSFKDEWATVAVRVSDY* |
Ga0114350_100631424 | F005092 | AGGA | MDKLEYALRAIKNCDFCGGVGAHYFSNGEDYDFEDCECNPYGLILDGDEVIWDNGLLSEPELAIFGSKEAN* |
Ga0114350_100631426 | F000808 | GAGG | MEYTYSLTTSYDGSLVNTLRVSDLLEAVNAWDKCVDFGEAKEYATYNLSDPTGKMYTKTFYRNGEVSIK* |
Ga0114350_100631427 | F049499 | AGG | MDYRLVDVLNADQLEVEDLIGLGDEIVKIISIDSIKDGFSLHIENEFGERDIVEIDDSEQFELFILE* |
Ga0114350_100631436 | F021288 | AGGA | MLGYTERDLADMIYGVYQADLLINADENPAIHNYLVKAHDFLMGLYSEGHVA* |
Ga0114350_100631441 | F007115 | AGGAG | MYRRGLRLPPSKEEKTAIAIGKLLSDFSLDLEAIGKYLATTQPYVVYARAIEVLEATEYNKTVAEYREQGKYYGNELF* |
Ga0114350_10063146 | F016958 | N/A | MAGNTSTMNLPTKEDVYYFIDLYKSSLKKNQRVKITCDLLGIDGYLQGTKPIR* |
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