Scaffold Ga0114350_1006314

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1006314
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16183
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (78.57%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F005092	Metagenome / Metatranscriptome	412	Y
F007115	Metagenome / Metatranscriptome	357	Y
F007363	Metagenome / Metatranscriptome	352	Y
F013526	Metagenome / Metatranscriptome	270	Y
F015730	Metagenome / Metatranscriptome	252	Y
F016958	Metagenome / Metatranscriptome	243	Y
F017484	Metagenome / Metatranscriptome	240	Y
F021288	Metagenome / Metatranscriptome	219	Y
F049499	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_100631412	F017484	N/A	MSIEIFRLNENGAGWVDIEDATTAELLDLELAIVTKAEVKMLCFKCHVEIPRGNVCVNHKNVRGGIYLD*
Ga0114350_100631413	F013526	AGGAGG	LTKKNVLISFVTDADTDLQAVFNLNKIMQKLSDDELEKFNAFEVLDVE*
Ga0114350_100631415	F015730	AGGAG	MLSQNTLDKIVYEYQHGGVKNYHPEISMSERKALLKYLFSLPTYCSCCVKG*
Ga0114350_100631422	F007363	AGGA	MRGYSIVDLLVDQYYAPTSLRRRFNGGIINFAEKREDTYPPEGWEHFAIRYRPTGSFKDEWATVAVRVSDY*
Ga0114350_100631424	F005092	AGGA	MDKLEYALRAIKNCDFCGGVGAHYFSNGEDYDFEDCECNPYGLILDGDEVIWDNGLLSEPELAIFGSKEAN*
Ga0114350_100631426	F000808	GAGG	MEYTYSLTTSYDGSLVNTLRVSDLLEAVNAWDKCVDFGEAKEYATYNLSDPTGKMYTKTFYRNGEVSIK*
Ga0114350_100631427	F049499	AGG	MDYRLVDVLNADQLEVEDLIGLGDEIVKIISIDSIKDGFSLHIENEFGERDIVEIDDSEQFELFILE*
Ga0114350_100631436	F021288	AGGA	MLGYTERDLADMIYGVYQADLLINADENPAIHNYLVKAHDFLMGLYSEGHVA*
Ga0114350_100631441	F007115	AGGAG	MYRRGLRLPPSKEEKTAIAIGKLLSDFSLDLEAIGKYLATTQPYVVYARAIEVLEATEYNKTVAEYREQGKYYGNELF*
Ga0114350_10063146	F016958	N/A	MAGNTSTMNLPTKEDVYYFIDLYKSSLKKNQRVKITCDLLGIDGYLQGTKPIR*