Scaffold Ga0114350_1005793

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1005793
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6914
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (76.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002489	Metagenome / Metatranscriptome	554	Y
F003663	Metagenome / Metatranscriptome	474	Y
F008241	Metagenome / Metatranscriptome	336	Y
F011299	Metagenome / Metatranscriptome	292	Y
F015208	Metagenome / Metatranscriptome	256	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_10057931	F008241	AGGA	MARGKAIQVKIATTKVIKALETRLAKLEADYTKQDENEAKYQKAMEKWRKEIGKWAIANFAKAENLRTNYRQWNRTLNVDFDLIVDEKDFP
Ga0114350_100579324	F002489	GGA	MSEEKEPSQNIEDNLPMVTYIMLHRIYDLLTLMSNKIVGPEDTAKMVQYHDAGYLLGPSPSFTPQEENQEK*
Ga0114350_10057934	F003663	AGG	MLSTAMDLLDATKESIFDDEVYAKYLFMYSAALSSKVADKVTRILLTEEQMSVLCDTIDEMENLSETILEELE*
Ga0114350_10057936	F011299	AGG	MMTRKDYVATAEILKYASTKTHPALFSKIVNDFAEMFAKDNERFDVARFHEASGYRVPNFS*
Ga0114350_10057937	F015208	GAG	MYKITVANDENPIHWSKEYSDELNAHEEFAKFIDWGFADEYSTINLFTPSGKCYTKIFHRSGRVVKR*