Scaffold Ga0114350_1004189

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1004189
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7369
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (90.91%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F004132	Metagenome / Metatranscriptome	451	Y
F005348	Metagenome / Metatranscriptome	403	Y
F012455	Metagenome / Metatranscriptome	280	Y
F034574	Metagenome / Metatranscriptome	174	Y
F047494	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_100418912	F005348	AGG	MINSVMSFDCNECNGNGLIFWGDNLDYNVEKCECENFVLGDLLQ*
Ga0114350_100418916	F012455	N/A	MFNKIKNKVIRIQELRRSNAATPIANKKKYSRKIKHKNKLQ*
Ga0114350_100418918	F047494	AGGA	MNSLLNKVCKHTPNKNAISIVHDERFTFCENCEQNITSHYIEDNDIMSYWSSWKVGK*
Ga0114350_10041892	F004132	AGGA	MSEIMTQEQLSVPYNPNLLVTYKYIPETYAAPESPTFMTDKVTQIEWDLHNGRNTLKQLAERRLDISWLEDQIVEWHDPNYTKHDVLQAIMEHFGFNPTKEVEVQGTVSFSGTINVPLSEIEDFDLSNVTIDVDLSSYEYDADLNVDEVSLEDHY*
Ga0114350_100418920	F034574	AGGAG	MKITYTIWQGSLLKGRLTAKSMKEITALIDELNEGKPSLKFVYMVHEIEQVA*
Ga0114350_10041899	F000808	AGGAG	MEYNYSLTTSYDGELVHTLRVSDMLEAVNAWTKCVDYGTAKEYATYNLSDPTGKMYTKTFYTNGKVAIK*