Scaffold Ga0114350_1003308

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1003308
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10279
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (78.57%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003784	Metagenome	468	Y
F005558	Metagenome	396	Y
F013279	Metagenome / Metatranscriptome	272	Y
F015702	Metagenome	252	Y
F016642	Metagenome	245	N
F017972	Metagenome	237	Y
F023834	Metagenome	208	Y
F026864	Metagenome	196	Y
F055450	Metagenome / Metatranscriptome	138	Y
F068766	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_100330812	F003784	GGAGG	MYDDDRERVGHNVTDFAAYGLSHLAPGQDEPDNTDTPTANPLVDHAAVTGYRAMGVSTEDLTSFIESFASLRAMRVKGVGHDQYSHAKGQKFESFTTSDTIRELIEELADASNYIDFLAIKLLNIQHTIDLVLPDCD*
Ga0114350_100330814	F013279	AGGAG	MMYDYRCPDCNTELTIERSIHEQPREPSCFECHIPMIRKWDSPSITFKGKGFYSTDK*
Ga0114350_100330815	F017972	GGAGG	VRTRHLSLVTQRHSVTTTTKSNVSSPYGPVNPASTTWLAQETLRANQEARLLELLNSLENVVDSLNYKSFTAYDTLVIATEGVRVALSAIVTDEAGTDTL*
Ga0114350_100330816	F055450	GGAGG	METENKRLRGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDEQEGKTWLDLDGNTIPVVGVRVRTAEGRGAPVLKEDIHKGTNEGNDGGEA*
Ga0114350_100330817	F068766	AGGAGG	VSEDNVVGFHPKNKLVNFYEIATAEGNAVWGGEDPHSAVQWLRQSPLNSRLLVSCWEAGEEDARLIIEPIDITKIVFAVMAGVQ*
Ga0114350_100330818	F015702	AGGAGG	MTIKEVELEYTVYNLVQLARKVWGDNADEYLAARLDSVITYNQMKVLIDSLKEESK*
Ga0114350_100330819	F023834	GGAGG	MSEPTVDYWKAKAQLCRDLALIQIEDEETEKEAGMNLMRMVHALSMVDTFNEGGSDDN*
Ga0114350_100330821	F026864	AGGAGG	MSEQDKTAQFVFTVVIVPDNKRYEVELWDFAGDEPALIAAGEGSNWRTALGEALSKIELPTDKVEKTINDVIKEGVEDEGV*
Ga0114350_100330822	F005558	AGGAGG	MTTDQDSMSWAELAQLTHATQVERFNWCMCEDNEGQENPYNDCPKEAE*
Ga0114350_10033089	F016642	GAGG	MIVRLSRDEVRVCTLLATERWLAKYGSVDRPNYAEGKKNGYLEHELLANVRANVSEWAVASLTDTAWNVPWYPNELHPRRAKLPDVGVNFEVRTVRTRDSIPFWSKDSGKIIVGTKILDEDYYSQVEVYGWCNPEEYATMQYRDEAIGGWRVPVTELKEF*