Scaffold Ga0114350_1003173

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1003173
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8698
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (10.53%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011920	Metagenome	285	Y
F012345	Metagenome	281	Y
F030019	Metagenome	186	Y
F064513	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_10031731	F064513	N/A	DSIMWERVLVQKDTIVRYKRSFVPQTRFEKRIEYKLKRDTLRMIEKVEVVKWKTEKRKNPKPNILLLVLGFVVGMITNWLLRNFKPTL*
Ga0114350_100317313	F011920	N/A	MDLSLKILWAKTTVWTVKERIKNVREKLEKDKPEAKDYINGGKESEEYLLETIQVINLLEDEITSLNREMNQLARRNAQLRVAYQELQEEIKFKNIEL*
Ga0114350_10031736	F030019	N/A	MIVTELKDFEVYRDTDKNFVYLFVTLWDEGDTDTNAEILAEYEIEIYDSYSNYKITKKNYNEILTIKQTKDCDDYLEKIYEANTFEDAYVEEYNDDGTWWFI*
Ga0114350_10031739	F012345	N/A	MRYKLTYQVGQKVVQQWILTSQSLAYWKKQDLLKTGQYQLGKFKVTPIDSL*