Scaffold Ga0114350_1002987

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1002987
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11022
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (89.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015204	Metagenome / Metatranscriptome	256	Y
F033010	Metagenome / Metatranscriptome	178	Y
F038210	Metagenome / Metatranscriptome	166	N
F046910	Metagenome / Metatranscriptome	150	Y
F065707	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_100298712	F015204	AGGA	MTFTEWWSQLTKAEQKVIGEQNAKYVWEECQKYTLMTIEDACKAKVAYDQGFKDGRERFEINLGGYVLTPGLGPGMIWIEAASGEGGDFHIDELAEVIGKFYRGRF*
Ga0114350_100298713	F065707	N/A	MDNTEGNTMRPATFSTENPPRPIDCVETKEYINGLRRRIEVQNDLMESLASQVTQLQRKNKKLETDIEKLCLDLGIMDGGPDVGWVQVPR*
Ga0114350_100298714	F046910	AGG	MTNALKEILEVLGSRPMVQVVIITAGGVKYALIGPVIQDPRATEFGEVTEIEFGDLLPLEVAAKMLAGEHKEALGMSLQ*
Ga0114350_100298716	F038210	GGAGG	LVALAVDLLHNVGMNIEKNIPLPGGVDPRERYPFPDMAVGDSFMILDKGWIKNLRSAAYMYSRRHPGTRFTCRRYGEGWRLWRVA*
Ga0114350_100298718	F033010	N/A	MVELKVVKRGRKVNLSPHQVAFHIKHADLRCPTYILVQYQPAGTAHAKKSELLLYAGEQAIDLVNLGIDTPAMARWPWTAISWAELRNFLVAS*