Scaffold Ga0114350

Basic Information
Taxon OID	3300008116 Open in IMG/M
Scaffold ID	Ga0114350_1002836 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9215
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (61.90%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9215

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (61.90%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000671	Metagenome / Metatranscriptome	945	Y
F002060	Metagenome / Metatranscriptome	597	Y
F003582	Metagenome / Metatranscriptome	478	Y
F011394	Metagenome / Metatranscriptome	291	Y
F011938	Metagenome / Metatranscriptome	285	Y
F028150	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_100283610	F011394	AGGAG	VSLESSKHFYDDKHFKHGINLWNGNPNKPVFYTKEMALKIRDIRKPVNDLQMDIVEYPDFLAIRLYEDNYMQYDGSAKTRIIDYVEKVKRLIESYGVRCELEGKPGERILRHS*
Ga0114350_100283611	F011938	GAGG	VKEYYDIVNVVFIHSMGTYGTVEVLGAFASKVKYEKDGIEYEELMENDEFSIIHEIVFTHIEEEN*
Ga0114350_100283612	F000671	GAGG	MEKILCYSCNKTKNKLNAKRSSLLPINLLMCETCINSKLEPRWVIILAGRQNGMDSVKEFVVKKKYVGSDISASELMI*
Ga0114350_100283613	F002060	N/A	MSIDYAAIIIALAAAVLSGMGTAIIAGLRENKKEKVRQQEREQDHLKLEIKDLKISLYKLEKELTEWKDKYYNAIQELINVKAELEETLLKLSFIDHKIDELNDLDPEF*
Ga0114350_10028362	F028150	AGGAGG	MWKWIKDRIIAILNENFTFLGFFVAWVVLEGSAKTVVGYLTLISVAIWFLTIGIRANAEKEE*
Ga0114350_10028366	F003582	AGAAG	MNTYKIKLEVEAEVQAFTEDDAADYVNDIFGVDDEVKSVKVINIKEK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114350_1002836

Overview

Ecosystem & Geography

Associated Families

Sequences