Scaffold Ga0114350_1002384

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1002384
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10100
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (13.04%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003691	Metagenome / Metatranscriptome	473	Y
F008359	Metagenome / Metatranscriptome	334	Y
F013759	Metagenome / Metatranscriptome	268	Y
F017128	Metagenome	242	Y
F017826	Metagenome / Metatranscriptome	238	Y
F059972	Metagenome	133	Y
F076068	Metagenome	118	Y
F080039	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_100238413	F080039	N/A	MSKRQLDHSLVCDKIGFDWANKKMMIRVYDSLLYVMENYTKKPTWVAIVKHMLTMDGVDLNSVAVNGYYSTIRKNLKDIGVIQYNGRKGLVKGPNWDRFFGDEDWSWFITNTNSGGYGTIVK*
Ga0114350_100238416	F008359	N/A	MNNMKSKVNVKSNYSIKKVKRVMRMKSENFEPTTFEVYKVSGPNKFRKYFVSRKDAKSFIDGYTDTKMTLGIVKNIMNEIKVK*
Ga0114350_100238417	F003691	N/A	MYWVERMTPHIVKNYNMNSRMTNEFNQFTETAYNTSRNERPIYKNFAATKLSSAVKPQSIVEFKDFMGRTHKVAVRNNTELKKQMKFFAELKKESATIKQIISQYPIKLGKVEKRFIADCKRELKQFGLTKKAIEIVLG*
Ga0114350_100238422	F013759	N/A	MKVEFGLSVLSKRETLLGIELTTHNGVSVKDGELCSERVVEFSIGIIFAIFTIGFVTLGNKIETPDNVMKAIEAFESEMDKNKFEK*
Ga0114350_100238423	F017826	N/A	MDNNKIKRIWNLVSVPFAFFLGAAYMWIGETGVGCIFILFATNEIIKNN*
Ga0114350_10023845	F076068	N/A	MIKESVYVEAADAFGTSIGVAHIIGFKNKSEHIKEEGIESFKKIEPELEVNYIILDAIDENKYQELQREIYKIKQKGDKRLKEKTIYRKALEIVLYGKK*
Ga0114350_10023846	F059972	GAG	MKLKELLVQIYEGNCERLPNESDEDYLQRCGNDMFNLPFGISQLSNIPNVMKKKIVVPNKIQHK*
Ga0114350_10023847	F017128	N/A	MDSITHIDIERYNTIEQDRHNTMGDKDFIEWCKQYNIGSRVEVVSEQRLKANDLMSQYTKYTHYISKRN*