Scaffold Ga0114350_1001864

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1001864
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11668
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (79.17%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025611	Metagenome	201	Y
F033788	Metagenome	176	Y
F034180	Metagenome / Metatranscriptome	175	Y
F042898	Metagenome	157	Y
F053780	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_100186412	F033788	AGG	MQFLTNILIAYGVISMIFTTVFLIGLVRNIRREIDLIEDVSRFKKTVKLVYVEQVDGMFRMHDKFTHHYICQASSEKELWETADAMFPNVKIMSTSIEAEVTKL*
Ga0114350_100186413	F042898	N/A	MNKSKLTIRVQDSEKINSIAEWCKDNLDKHEWDMTPIHLFKPDYRFHFECEKTRIQVILQHL*
Ga0114350_100186419	F034180	AGGAG	VNIKKISLAVAGALLVVGCASNNGIIKNADLKPETDSIRPKPVSTVFHRPQGTMTITFSPDGKFVEISSKGTAPIAGNNAFSIEQAAQVAQLRAKRNIAEFISTQLNTTRSVKVLSTAVQKSLENTSNGMVEEVKVDDKDFDVNGDPVIINAYNDGSKDTAPKPAVEGNPNTNSEKIAEIVRENITTSSTALLRGSVIVDEKIDQAGRTIVVEIKTGVQNINAANELRRLMGSN*
Ga0114350_10018642	F025611	GAG	MRIALCFSGQNRTGHATADNIKRYVGDLLPECDVFAHFWDSETRGTGYANRLGAVSTDAEWHTAKKSNPEKNVEFFRQWAPRTIMIEEYDLQPTKSTWGGRRWDPVEGKWHVSMWRSLWEANKLKQDYAQKNQIIYDYTIRLRSDLVFDSSKTLADDLKLITHENMFLFGDHYGIWPIHGMTRVEDILWISPSKLMDQISTYYACYTNTVPNIDDPQLPGYQDWQWHSANWIVNQLGYQFYPLANNQMRIYTEQDIELGIDPMDPGFGPSGKPGGFHNKSI*
Ga0114350_10018646	F053780	GGAG	MGDKTEHEIWLDAYANDLADITIDTSDMNTEQWDDWITQYTGELDLDINRSLGANDIKLNGGGEEMLRVAEDGFYVRGVRVEADEKEAKAVYEAFKSWMTYAILNGEINN*