Scaffold Ga0114350_1001767

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1001767
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12060
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (76.47%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001176	Metagenome / Metatranscriptome	756	Y
F012013	Metagenome / Metatranscriptome	284	Y
F013878	Metagenome / Metatranscriptome	267	Y
F017101	Metagenome / Metatranscriptome	242	Y
F068492	Metagenome / Metatranscriptome	124	Y
F076961	Metagenome / Metatranscriptome	117	Y
F085211	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_100176714	F001176	GAG	MTNGTGMDTPPNNEPSGAVTSQDVARKRPSQGKFRSNVQNQRALTRIDTNKHGIRRETSLVPKKTGRSKKG*
Ga0114350_100176718	F076961	N/A	MVEDYIDIKIRRDIIKQISDLELPEDWKTQQVIDYIIRKIDKDNVR*
Ga0114350_10017672	F068492	AGGAG	VNSTQLEPRLQKLIDLGESGTDILHGELKNLMYKAEQEFLEAQRIEEENDYDDAMESMERKYWEGQCDALEHVYALTYQLAFAIQERTQKNG*
Ga0114350_100176723	F017101	AGGAG	MDEKMGKTMSVLEAIIADVSQALFQKWANALPEDQRSEENLNNLSKNATESTFFVVKMFMDKFNEAAEEIKSIPEPLTEQQ*
Ga0114350_10017673	F012013	AGGA	MAKLDLQEQTRRDDIYNELNEIVDKITTLPVFPSLLWVWTFDVLRNIYENNRYEDLAVNDYVDEAVPAGVTLKQIFDKFWEDVDGIGLSMDLGDEIIDETIRDWMRDNDFLVALDDDGWLDDEENEGENE*
Ga0114350_100176733	F013878	AGG	MLNLTEKGVEVFIKKASNIEPYWDNYDLVIWKKDQSAYTNIKGMFRNNSWGMADRITVNNNGIWKLPKKYVKYLK*
Ga0114350_10017679	F085211	GAG	MRNFLDDSIAEHNSKPPLRWIANIAGSIASRGMLKIAYMEEDGYTGWKYKFNGFLWDTFWPIYQKYGTFYKLNMDMSGAGWDDYDADGIPYWGNWDFEDPETGDAFRVINFGGKE*