NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114350_1001578

Scaffold Ga0114350_1001578


Overview

Basic Information
Taxon OID3300008116 Open in IMG/M
Scaffold IDGa0114350_1001578 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16985
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002391Metagenome / Metatranscriptome564Y
F039597Metagenome / Metatranscriptome163Y
F057881Metagenome135N
F075866Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0114350_100157816F039597N/AMTLGYNDRTCTNGKGGIKSVLLFPLGNVTGSTIADNEITALTVTGEVFLYKLKSNLSSYTAPIRVNKGNGTLWYEQTLTMILASDTKELRSEIHLLGQNEVVALVEKADGTVVALGFGEGLQIAEASAFFVYLKPWK*
Ga0114350_10015782F057881GAGMKQLEIKLPTTLSACTPEQMTRWLMMAEAMKEQRDDDITQLLIFQCQLLSLFSGESINKIKRADIESIQVAANHLLQLLVTYKYQEPKSEIEVNGKVYCFEKNFGHVSTGQIIDLKLIEDISQDPCQALAIMYVEKGMEYCQEDDRGRVLNPNEIRYNEFKENFPGDEFLNFFSFFLDLSEKRRLAILGIQMARQRMEMMMMEQDLKIQSGSVGQLSYIDYPKKWDSVWQRLHNSLM*
Ga0114350_10015783F075866N/AMADFDFLEDFGISAQDAEQPKNAYDRFIIELSNQLATEFRDYTKKVAQNTGALAASIIPVPTGQLSFRLEAEDYYPFVDEGVNAVGTNNYGSQFSFRYPGVSHNMATAISQWKGLDMSHAYAVASNIKQRGLQPKRITENVINDQVLERIANDLAELTGLMFEINFTKNGSNNI*
Ga0114350_10015787F002391GAGMVSFRRYNYVNKIKMAIANSVLTAQQGTFIVNNTAAKTVDHDAIVVLEDTVFSAIRVAGSDVKSTYIAATGTAVKAGAIIRPINGAKFSGVTLTSGSVCLVL*
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