Scaffold Ga0114350_1001508

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1001508
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24404
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (50.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010682	Metagenome	300	Y
F027502	Metagenome	194	Y
F048284	Metagenome	148	Y
F051095	Metagenome	144	Y
F070060	Metagenome / Metatranscriptome	123	Y
F077254	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_100150811	F077254	N/A	MDPYTRAAFGFAKAYQMNMRAADEQRQANQPSSDAFAEGLADEERDYTYSPNPQAPAPPSEQYTGMETDDGTILDQSNGNSLKRAKQKATKYLQLGD*
Ga0114350_100150823	F027502	AGCAG	MELSERQRQLRERDVRRLSPEQDPATFMRLYIESNFPQTLAYPSPQQSERGLSTDNQQDALKLTKKPLSGTKYDNPGGY*
Ga0114350_100150824	F048284	GGTGG	VFSKADYELAARILGLPVPQTPAEMAAATPATAQIVRRFAQGLPPMPGMEADGIYTGATRSLNTYPDNTMPMQKAQLASRLRTEPERPHEDAYLMELIASLDPEEFDLILMLLEQLAEQEDEESDRLSSQRPLEYDTPNLGSNYSVLNAPSSNGIEPSRAYQQLS*
Ga0114350_100150833	F070060	GGAGG	MDCVGFDEGDFEVVGVDAYGILVKAAWGEQSFVSSWHLVDERKVQLTRRTKPKDWDARKKDREQAVEG*
Ga0114350_10015084	F010682	GGAG	MVYAPQTNWKYDKNLYHPIQSGPQRTGDDLDLRDTYLTISSGYVTPLGVQQTWLGVIDEGADFGRIPVGPPNISGYFTTEWRAVPPAISGYWTNYENTQPHASGLLDSYVGFRAQGLYSTANATVQTALGPQPGLRNFGTHTWYGEQIPDNQLYSPFQTPSSNDNTLDGGGITGGGVTHPSVASPTLTNPTNDTSGSRAAWVYHYPIYCQSFTETRYSGVPGQMGSPVRNSYRGKSLRYVPNYGSVYGVLGEGVRNMVRRFSPGTKI*
Ga0114350_10015085	F051095	GAG	MSSHIERVLTVFFEDPESSIACFSGSITESLTHPRGVKKVIPYLIKASLVGYMLATFVSPAIEERFKLTKNEAIATSFIIGYAGIRILAAVERLAEKELERRLGKNDDNVS*