Basic Information | |
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Taxon OID | 3300008116 Open in IMG/M |
Scaffold ID | Ga0114350_1001508 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 24404 |
Total Scaffold Genes | 40 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (50.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F010682 | Metagenome | 300 | Y |
F027502 | Metagenome | 194 | Y |
F048284 | Metagenome | 148 | Y |
F051095 | Metagenome | 144 | Y |
F070060 | Metagenome / Metatranscriptome | 123 | Y |
F077254 | Metagenome | 117 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114350_100150811 | F077254 | N/A | MDPYTRAAFGFAKAYQMNMRAADEQRQANQPSSDAFAEGLADEERDYTYSPNPQAPAPPSEQYTGMETDDGTILDQSNGNSLKRAKQKATKYLQLGD* |
Ga0114350_100150823 | F027502 | AGCAG | MELSERQRQLRERDVRRLSPEQDPATFMRLYIESNFPQTLAYPSPQQSERGLSTDNQQDALKLTKKPLSGTKYDNPGGY* |
Ga0114350_100150824 | F048284 | GGTGG | VFSKADYELAARILGLPVPQTPAEMAAATPATAQIVRRFAQGLPPMPGMEADGIYTGATRSLNTYPDNTMPMQKAQLASRLRTEPERPHEDAYLMELIASLDPEEFDLILMLLEQLAEQEDEESDRLSSQRPLEYDTPNLGSNYSVLNAPSSNGIEPSRAYQQLS* |
Ga0114350_100150833 | F070060 | GGAGG | MDCVGFDEGDFEVVGVDAYGILVKAAWGEQSFVSSWHLVDERKVQLTRRTKPKDWDARKKDREQAVEG* |
Ga0114350_10015084 | F010682 | GGAG | MVYAPQTNWKYDKNLYHPIQSGPQRTGDDLDLRDTYLTISSGYVTPLGVQQTWLGVIDEGADFGRIPVGPPNISGYFTTEWRAVPPAISGYWTNYENTQPHASGLLDSYVGFRAQGLYSTANATVQTALGPQPGLRNFGTHTWYGEQIPDNQLYSPFQTPSSNDNTLDGGGITGGGVTHPSVASPTLTNPTNDTSGSRAAWVYHYPIYCQSFTETRYSGVPGQMGSPVRNSYRGKSLRYVPNYGSVYGVLGEGVRNMVRRFSPGTKI* |
Ga0114350_10015085 | F051095 | GAG | MSSHIERVLTVFFEDPESSIACFSGSITESLTHPRGVKKVIPYLIKASLVGYMLATFVSPAIEERFKLTKNEAIATSFIIGYAGIRILAAVERLAEKELERRLGKNDDNVS* |
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