Scaffold Ga0114350_1001400

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1001400
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18709
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (67.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010766	Metagenome / Metatranscriptome	299	Y
F102563	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_100140018	F102563	AGG	MIANNAGGTPSKPHKFFERHLDIDLPSLQEFLEEKYKLIETAQLRGVDTMENDDKFWIESGSLSTVKWREYNVFQLYHTGLHTLYKALSDTVKEACEYYGVNFEEQQYYVQGWFNINNAEVGKLNWHDHGGPFAPHFHGYYCVNAEPSITHYKLFNDDSQVVDNVNKNNRLIVSEMGHPHAMGDWAWSGSRITVAYDIEPLESLISNNMTIEQHWVPLL*
Ga0114350_100140026	F010766	AGAAGG	MRIKIIKFIVKTLGYEWGGDNLNAPIWTIKAKKKK*