Scaffold Ga0114350_1001171

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1001171
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19417
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (12.77%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019993	Metagenome / Metatranscriptome	226	Y
F021092	Metagenome / Metatranscriptome	220	N
F023325	Metagenome / Metatranscriptome	210	N
F025232	Metagenome / Metatranscriptome	202	Y
F028461	Metagenome	191	N
F086850	Metagenome / Metatranscriptome	110	Y
F088542	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_100117110	F088542	N/A	MAKKKSTVQYKDRKYNYPKGFTKYGKAKTGFMPAAQGARVFVENNLEKIQKGTIPYDSLTQREKRVYRGKTSNTFANTFTFKGKRYYDPTGVLRKALDNLPNLKGKRNLTNLLPEKDFKDFFDQRINPTKGKLNEKDRSKWLEFSSSLYDFNKGEKAKFYRDESGSLMDIVTKLNKARKQGREIRVIDTDGSIKIGVNAIDRMREFEAEKLKEFTDKAKPGQNIQLQIIYISTDWNPYTNTVTFNLNNVQVNDLNKTP*
Ga0114350_100117111	F028461	N/A	MKKQNAATMFKNPQLQESIIRRYKEAGLDFTVKHSNYNTQIIGQESVLKFVQTEHSIRVFIAYNKIVKDLKASDRTVEILQGDWSTENFDSKNGLKPCKLNSVLNLDITSAYPYCLFINKLITLDTFNYLMQLPKNERLPAIGMIAKKSVWIEYKKGDASSWELKEGEYANIFFFVINQITDLMAWAAEIAGSDFLFYWVDGIFLRPGIKKAKLNEITRIFAEQGYYYKYENVKDFSVVRDGDKLFINMIKNGEEKPYTMYDKNLARNFTKILQALENEQNTLHVSGATA*
Ga0114350_100117119	F025232	N/A	MENVNEKILEDYRIVVMRLDLMKAEVDEVNRANWKLRMAFNELLEVYQDTLDRIDSIKDRGEVEYYWCEKAGILD*
Ga0114350_100117125	F019993	N/A	MNKEVKLLLVAGVGYLGFKAYQIYTALKQLSYAPTGINFSIIKERGAIGGTLFVDIINPTAATIKVDGFTGTVTTTNGTLIGDYKGTALVLKPGSNNVRISWGSRATTTLIPLALGIFKGNWPVLKFNTVMNVKGFPIPTSFTLNTKDYKPTLV*
Ga0114350_100117132	F023325	AGTAG	MRIISPLLEYLFASKKMKQVGSYEGAYTKSVYLPFTSNATLGQQYYLQPDEVLDSANNFITGIELVDSSTNATAPTVPTTDPLTPGQASQGYLYICNLNREILAALPLYTLIRRLNAGKPNYLYFDEPVVWQNCFIQFESLGTAITTAHSVWLRVTYSPTEK*
Ga0114350_100117133	F021092	N/A	MTDPHYILEYMQDNDLRYFQVANQFNRDVVVSFNDRSLEDGIEKMRKFLSKNTGFHRIKLYSNNDLKTNGVPRQEPQTFEVSITGKEFDPPKQDSEPITGFGVNPSYPSAGGIIGVEQYLSKHEENATLREKIKGLELEIQYLRDQHNREIERLRSDHELALKAAKDSNQMFSQGLGMLMQRMGVGE*
Ga0114350_100117146	F086850	N/A	MEKKLRFGISQYSRPTPKKLRRLGDGLLLCSTILTSETMIDKPAIASIALISGVIGKFLTNFFSEI*