Scaffold Ga0114350_1000538

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1000538
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39655
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (68.18%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F003768	Metagenome	469	Y
F006304	Metagenome / Metatranscriptome	376	Y
F022860	Metagenome / Metatranscriptome	212	Y
F027495	Metagenome	194	Y
F033780	Metagenome	176	Y
F045719	Metagenome / Metatranscriptome	152	Y
F056573	Metagenome	137	Y
F060870	Metagenome	132	Y
F078657	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_100053817	F078657	AGGAGG	VTDNQSIFYEAWISDLQRDLDSLREDKRELLRKVAQLEHLIAEYGNKLTNLIQQRGDE*
Ga0114350_100053818	F045719	GGAG	MSASWYKLKDESWGVKVRHEGQSGEQVEVTNKKGETKTVWLVARIAKFDDAQLWSVSNDAPPAAPKTLDEEPF*
Ga0114350_10005382	F022860	AGGA	MKRILDYITENSWTLAGTGLVLITLSGPTLRQALWITGVALVLHSVLTFTGGKDD*
Ga0114350_10005383	F003378	AGGGGG	MTDIMLKANATVAKFLDLGQRLFSLFLANALPAVTGGAVIGVSVAKSALLAGFMAVVQVIQKLASASTDGELTSEEIQEAFGKK*
Ga0114350_100053847	F056573	N/A	VSIFRPPTDDFLVLGIPPKEFDSQEVRLAYSLFRHFDAEPRGRNVFLLTNGTYTENEPNEIATIAKVYWGGTDNEVSADEVASLTAAGYGAYIS*
Ga0114350_100053848	F027495	AGG	MKHAETHPTLDVEGCFACRISHVRMSGVAMPTRHNVQHLNTKEKQLDKDLDAYKRIRKTGGQPTKIDGSAKLEKIAD*
Ga0114350_10005385	F060870	GAG	VDGGWALVLAAVVTAVGGIIVTVLQQFKKENHTDHQIVVGLLQVLRKSQMRVEDKVDRVDERLTSHLDSHASEGILDNGRTVHQNGVEATSKVS*
Ga0114350_100053851	F006304	N/A	MKRLSAAQKYAQLKKQTEGAGMTVREKAGKIVVSRRKKKKRG*
Ga0114350_100053861	F003768	GGTGG	MAHFAKVENGVVREVIVVGNGDAPTEAAGKAFIASIGLAGEWVQTSYNGNPVEGADRGKFAGIGDVWDGSKFVSEVAE*
Ga0114350_10005389	F033780	AGGA	MSCPWSLVAVHWIDAFDSSNGWINTKDYKPKTQHVVSVGWLWPDLLDGYVSVTCSWCPGEEPELDTVGMVTHIPQGMVQRVSILGEPDWNI*