Scaffold Ga0114350_1000463

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1000463
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32501
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (83.64%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021520	Metagenome / Metatranscriptome	218	N
F026250	Metagenome / Metatranscriptome	198	Y
F030424	Metagenome	185	N
F036672	Metagenome / Metatranscriptome	169	N
F041731	Metagenome	159	N
F067688	Metagenome	125	N
F095380	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_100046329	F036672	AGAAGG	MKFWGEFHALIWTIAASVTTILTLSGTLQRIVIWLTIAALVLHFIGAYTNKDNN*
Ga0114350_100046332	F067688	AGG	VDWGVVIAALVTAVGGIVTTLLLKVRKENTNDHANVMEILRSVGGNVERIDSKLDSHIDWHLKEATRGEVPKRN*
Ga0114350_100046335	F021520	GAGG	MSHDEMRTMVVVRWHDAHAATDTWTPITDIGSEPCEVVSCGFLLPISDGGKEGHITIFQSKTDADDVDGVLCIPVAMVQDMKVMTKNIPGLVPQTLINKGSKKS*
Ga0114350_100046340	F026250	N/A	MNDPKEGNMTNRQKQIGTVIGMGILWGFWLLPTAEELPDAQPATPLEWKLFIALNFAAIVYLHILNVREHQLQIRKEAQERYWQQMETRSRYYHPTNRDYQ*
Ga0114350_100046343	F041731	GGA	MNAIEGRDLDQPGDDQAVTYIRERLNGIQGADRARMAMLITQAELAGRSISLKETKSLRRFEIARGLFLLFDSGQFDEDLVKDICSQITMQKYTKPGEALANLDVKQAQRFANACHGIARDLLNLIYIPETNQFHIEEKAS*
Ga0114350_100046346	F030424	AGGAGG	MIDVNQFAELELRVNDLQNALARVAEERDNYKDTADSLFKELEACRATLTQANSDISRLRVYLAQGAEL*
Ga0114350_100046351	F095380	AGG	MSRDNELALDLFMLGYERNELVHMLNEANSLIESLRNELESVKAELEQLRK*