Scaffold Ga0114350_1000363

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1000363
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28688
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018701	Metagenome / Metatranscriptome	233	Y
F020339	Metagenome / Metatranscriptome	224	Y
F062691	Metagenome / Metatranscriptome	130	Y
F062695	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_100036316	F018701	AGGAG	MSAASDKFENDVAKNINKIPGIVAKRPKVSTEYSDVLMEYNKMKVWIEVKMSHTDNLSNPRVYYEKGKWHTTYKTPAAKHTVDILNKSAQAKKFIKDIAKFSGIPEKVIKIPTTKSGLKEEGAVPLSVMKAYFNQPNINRYIANEENYNLGDVVTEHYTIGKAEPAYYMQAGDDFYMISKKNPLKIKGIPTLSGSGDFKVRVATRSEFYEVQAEIKIKKMPDSKFSVAPGTKKQNPFLSMSK*
Ga0114350_100036322	F062691	AGG	MNIKCITFKTHQTIIADVSLEGDTVVLVKNPVQVISVPPRSASDPGGVGFAPYLAFVEEFDKGITLKNEDILCINTPVDDLLENYRKMFSRIELAPPGLKL*
Ga0114350_100036323	F020339	AGG	MSNINKIAKQLAESNSKLPKAYKYDLALRDFDNKVELIGLVDDPTYDIADFRGREMLFPKKWVTLDVYEPTTKVAV*
Ga0114350_100036333	F062695	AGG	MAKLVPFTNASQAFDGDSIFINAEIVASVFEIIDPDENAKLQRYTVIYGVNNVDWRVKESLLDVISSLNNA*