Scaffold Ga0114350_1000014

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1000014
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 174437
• Total Scaffold Genes: 241
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (14.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004154	Metagenome / Metatranscriptome	450	Y
F022647	Metagenome	213	Y
F024311	Metagenome / Metatranscriptome	206	Y
F064713	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_1000014169	F064713	N/A	MSKTKKEEWEEAMLENNSYYDIDILNNANASIYKKIDKWQKKYDEASSNMGKWYCQIQIDKLKRKLKRYQ*
Ga0114350_100001477	F024311	AGAAG	LKNKFMDKYQALGSNIFGFEIFEEVFRVINERGFESNNQMFKAGAASAEAAVRRLREEYYEAISKSLPNG*
Ga0114350_10000148	F022647	N/A	MHKLTELLGLITEGKIEYPADHKPGMRVTKGGSMCANCEYWVEKGNLCNNEYWLKWRDGKAKVPAPADEYCCNWWHAK*
Ga0114350_100001482	F004154	N/A	MLNKFIYYFLRYWVSISFLLLAFYFYEPTPSIIHCSPDSILQEIEVKTFLGLNEMTLMWILMAIAHGANACYCDIKSILKKV*