Scaffold Ga0114348

Basic Information
Taxon OID	3300008115 Open in IMG/M
Scaffold ID	Ga0114348_1003031 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-100-LTR
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-100-LTR

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9858
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

9858

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (60.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F067428	Metagenome / Metatranscriptome	125	N
F096671	Metagenome	104	N
F096672	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114348_10030313	F096671	N/A	MELGRCLVRIIHRDITLTNIVIRPSCLQACDNYEPDEADDVDSIEAEENSVNRHIYDLNYETSGTREWFEILGSMIAKLTNLNQLTFDGIDPQYEYLERFWGEVSSSNSLTSIAFANMNLEHSDDILCAIGAPNIRNVMFNNCSLHHEIGYCLRYIHVDHYSISTLHFEECRFTNTSTIRGVVDFVGHLAIMQSVTSLKFISCAFDDELSICLVRCFHEERVRLGFGVVQINLV*
Ga0114348_10030316	F096672	GAG	MHRHAAIVAGLVCSKFNHFTNDLLPGSLTLDDFRNEGVLISFKDPGITVEEHLDMIMTKAIEAPMFHNEFNLTAYIPTTQGVEKDATKLIEAAKMYSGWISKFKLASATRTLSNNIARWLEQTLTHSTKETRNNPNYRPKVDAEKASLWTPQNETKPNDFQKDMKKFQKDNDKTDKNDDAVCYGCPSCITSDVWDAYIKNPFDPVARKAWVKSISLPCTDEKKNTEMTPPYGITYESVTTDIGTFGNRNGPRKVDARMYNGYLIIPGIVYHLLSKIKTKSIETLLGNDYEVKVINFIARYGNYTRKTPHVTIHGAYSRYVEMTDPIYVNASTGDNQVIPVTLFLVLLYNACFMFQENKDTNLLIRALDTFDLGADVGPDKFVTTFSESNFPNNSNQEKIE*
Ga0114348_10030319	F067428	GAG	MSNIKKRLILDGDNSKTDMKLAAYEIDWFNPSTTIIKCQKYTNIKNLPVTQEGQLTFLLSKFETPDIKTAFADTIGKVGTPARVAFYPLPLRRDKVVRNFLEFIYDGRSIIVDNSKDAFR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114348_1003031

Overview

Ecosystem & Geography

Associated Families

Sequences