Scaffold Ga0114347_1027261

Overview

Basic Information

• Taxon OID: 3300008114
• Scaffold ID: Ga0114347_1027261
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2615
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005504	Metagenome / Metatranscriptome	398	Y
F007644	Metagenome / Metatranscriptome	347	Y
F024786	Metagenome / Metatranscriptome	204	Y
F038241	Metagenome / Metatranscriptome	166	Y
F069753	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_10272611	F069753	AGGCGG	MQSKEHKIGELLANSVEDHFFNPAALGRYLADQPIYTVDRVMEVVAWIIEKQAERYRREVANNGTISEGLIIANMLDKMIDKIKVSNDLKSVQLPITPK
Ga0114347_102726111	F005504	N/A	YEEETGWGGEYEIVRGEVKELAEWENRCYACQSFDTLSYCENDCGEFCAECNQGSWQDEEAMKECQTHMVLLDTTEKAEV*
Ga0114347_10272613	F024786	GAGG	LPTYRIFGTKYINYYTILEAADEYEAVDLANSLPETAWNSVESDDVIEATDIYLNEDTSIDLQLNI*
Ga0114347_10272618	F007644	GGAGG	LTKSSHFLEYVKLHLISLNQDLESHDNPETKIHLDGQIVATRHLLSVATDIMNASNERYE
Ga0114347_10272619	F038241	AGGAG	MLGYTMDDLDQMSNAVHDAKLFYIRNSDVEQVDKDPLVEGLLKANDFLQGLWAEGYFD*