Scaffold Ga0114347_1012862

Overview

Basic Information

• Taxon OID: 3300008114
• Scaffold ID: Ga0114347_1012862
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4145
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050332	Metagenome	145	N
F090332	Metagenome	108	N
F099195	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_101286210	F099195	GGAG	VSDEEIRQLFKEAAAKEGKSLRQWCKDNGIVYETLVGREIPSDIPLSAVHDHDGSLFGNCPVCTKE*
Ga0114347_10128622	F050332	GGAG	MAEFARGPQVSYDVWLSDKKEPKEKEFKTGTKAFEFFASRATDAYTQWRSADKETRGAEPADKYVYLTLTVFDKKTQEHLYKIYYKVAESRTKNPGEKRPNLHVTGESRNVRQYDGKNYEDVTVRDASPLIWTPAEVRE*
Ga0114347_10128624	F090332	N/A	MIDDDLDIVQNGDICYLLDGRYGRIWAGLSVRYDGAKAPEGWFFLRETIENRVLNKELIAARLIELGDKMIVGRRTAQLARVRNG*