Scaffold Ga0114347_1004573

Overview

Basic Information

• Taxon OID: 3300008114
• Scaffold ID: Ga0114347_1004573
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12955
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (81.25%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F002301	Metagenome / Metatranscriptome	573	Y
F010680	Metagenome / Metatranscriptome	300	Y
F040623	Metagenome / Metatranscriptome	161	Y
F084182	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_100457314	F040623	AGCAG	MKVRIAIEQVIDMEDAMSDDIGFEVYGPTNISNEDKVDYLVARFIEDIDYLVKYNEVSNQVLVEYIED*
Ga0114347_100457324	F002301	N/A	MLEALDIQQMLWLWFLTHPRKYAEWSALEQKDKDKLIAKSLRNAALKYCEKEKAKTVGYEVLDLYYYDATVIEAFLPSIISETYEMPVKIKDLNFKFNKTEPSNDGNNWLVLRSDIASAFYKLSEAKQNILRIRFSTENNEWALIAKDLNTSPDGARMKVQRAVNSLIRNLGGWRPYADEDGPVVEEDEDESTETY*
Ga0114347_100457327	F010680	GGA	MIVELSQEEVRVCTLLAVERWLTKFGSLDKPNYAAGKRLGKLEPELNANIRANVSEWAVAKEYDLTWSVPWYPNSLHKRRKNISDVGNFEVRTVRTQTAIPFWEKDKDRIIFGTKVLDVEYYSRVEIYGQFKGSDYMTPEYRDESIGGWRVPVELLSS*
Ga0114347_100457328	F000368	AGG	MEQLKQVSLSWFRAAASAAIALYLAGETNFKVLGTAALAGFLGPVLKWLDPSAKEFGRGAE*
Ga0114347_10045737	F084182	GGAG	MRDEDYLKNLGDIAKWLDTLIVEVNKINETVEDLIAEAPVSLEAWDKVGNQIWSK*