NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114347_1003955

Scaffold Ga0114347_1003955


Overview

Basic Information
Taxon OID3300008114 Open in IMG/M
Scaffold IDGa0114347_1003955 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19572
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (78.26%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005092Metagenome / Metatranscriptome412Y
F005745Metagenome / Metatranscriptome391Y
F026861Metagenome / Metatranscriptome196Y
F034902Metagenome / Metatranscriptome173Y
F058095Metagenome / Metatranscriptome135Y
F081257Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0114347_100395515F034902AGGAMISTAIAIQNATREAVMDDGIMSFASMMYHHKDEMTPDEFARAMFEYSTSLSALTATLVTSACLTESQLDEMMNTIKEMESMGKDITNGNE*
Ga0114347_100395523F058095GAGGMDYNYVLTTSYDGELFATNRISDFMEAHEAWAKCVDHGNAKEYATYNLTDLTGKMYTKTFYANGQVVIR*
Ga0114347_100395525F005092AGGAMDKLEYALRTIANCDLCYGKGYHGFANGEDYDIEDCECNPYGLIVDEDGDVIFDNGLLSEKDLSIFATSEAN*
Ga0114347_100395530F026861GAGMKLDEFKALIESQRKAQQLTNLEKIATIVNNTNNKKGKN*
Ga0114347_100395534F081257AGGMLTLSYTAQKEDNLVSVSNRLMVSERQINDLLDTLVSNGYDIISTEITDGDYSPHWQG*
Ga0114347_10039559F005745GGAMEVMPTTLDPRLQKLVNLKVEGIDILHGELKILMLEAEAEFTMAQEIEEENDYSDAMESMERKYWEGYTDALAALYGLTYDLSFAIAARKAADENL*
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