Scaffold Ga0114347_1003885

Overview

Basic Information

• Taxon OID: 3300008114
• Scaffold ID: Ga0114347_1003885
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14646
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (79.17%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009679	Metagenome / Metatranscriptome	314	Y
F009746	Metagenome / Metatranscriptome	313	N
F026507	Metagenome	197	N
F031795	Metagenome	181	N
F036209	Metagenome / Metatranscriptome	170	Y
F078409	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_100388514	F031795	N/A	VTVYTPYPKVIFAGVNEYADNTISNISISLGRRDIYEQALVGIANVRLWTDADTALNVNLSDSIQIQVKDSTNTYRTIYTGTISDLDISLDAYGSEGSVAIYSITAVGPLAILNRFTTGSLGFAKEFDGTRVFNILSDAFLENWDEVVPTLTWSAVSNLATWANWGGTNQTLVDDLVADIDTPGTYELTAYTGGVANALSLAQEAAQSGRGFLYEAPDGSIHYESYTSRATQTPLTLTDDDLLAVGLRQAAQWSEIVNDVTLTYKNNQEKYAADYTSQQSYGELSGSRSTQLENGADAQSQANSFLESRAYPRTYPEELTIPLHSPTVSDATRDALILMHVGSAVYTQDLPAVFGGTFDGFVEGIKWNLDRYTANMTLICSAISETYPNQVWLQIAPTITWAGYTPTTTEWQDL*
Ga0114347_100388516	F036209	GAG	MVMADKVTVKMTPDSRDLKSLYKAFREMDEGAKKALKDDVTSISQWSATEMQSSYNLNPLPAQAQKVAATIRANKDRIPNVTIGGSKGRFSGGAVSGQVLFGSEFGGPAPFENGGRRFPDRSPAQGRGNEGYGIFITLKRIQPELTRRWKDAVSKRVIEKWDDNNG*
Ga0114347_100388519	F009746	GAGG	LANLATYRANLAATLAAAGRVVYSYPNENITPPAIVLVPGSPYITVSAIGGARCNVRFDITVIVNAADNQAALANLETLIFSVTDLLANNISFLGGWSQPTVQQIGNADMLISQINIEMVTTN*
Ga0114347_10038852	F078409	AGG	VAFAKNGKIVDEIERVLENIMKDPLGPDAVWASIEGKIKGHYLAAQNLPQACPQCARILEPVDFGVDPDSNERMWVTHCCGNWEKFYEKLGPADLT*
Ga0114347_100388520	F009679	AGGAGG	MALITLSELKSVLGIGDIYADSIVQAVADSAENIILSYLIFDDVSIVGASITSNVARFYCHDNTFVVGQALTVTGCGSPFNGSRTVTKVGYDEYNVTYFEAALTNADITKRQIIPNGRAVLTSQATLYDTTPEVREAALAVACDIWITRTGTLGQQGVDFQSPAPYRLGRSMLTRVSGLLGKHLDTRGYLG*
Ga0114347_10038853	F026507	GGA	MICEHGADAPKFCAICRHQGIMGKDEGITLAKDSQLNWHNEAVICIRQMARTGKPFTAEDVVNEIGAPGGSGKVIGAAFNTVARSGMIWRCGERPADRKSSHRRMLAVWRGGQIQEQTRLFDGN*