Scaffold Ga0114347_1003659

Overview

Basic Information

• Taxon OID: 3300008114
• Scaffold ID: Ga0114347_1003659
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9087
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (100.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006017	Metagenome / Metatranscriptome	383	N
F006467	Metagenome / Metatranscriptome	372	Y
F026257	Metagenome	198	Y
F027501	Metagenome / Metatranscriptome	194	N
F048282	Metagenome / Metatranscriptome	148	N
F082596	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_10036591	F082596	AGG	LKPLSNDVALDLARGRSDIEFFALRWLGIQGNPGQVNWWKACSERDETNYRPRYITTVVSAGNRAGKTLAMAVVCLHHALYKLGIPNPNPNDPESAVRWSNAPYEWYHVGIQQETAELVFREVEAILGGNHPAQKGRGCPISKELGKIIDTSKKYRGEYPWIKFHPVVGGASIHFRTTQDRAKALLGKDMNGISFDEATFEPHLVMIYQEVLNLR
Ga0114347_100365917	F048282	AGGGGG	VTTAVRNYIDRCAKILGLGHWEIKLSEQNPPEDAWADIEVSQNLYQATIRFSPDLWKEKATDIRRVVAHELIHCHYAGVERLVDTLEKPLGTAAFEIVSTVWDVESERAADSLSTVVAELLPMPTFGERS*
Ga0114347_10036595	F027501	AGGAG	MYSDIKAGIRWVIDNTGVDEALIEFGRTFITVSISVALGLGIPLLDITGGDFRTELSAGLASRLQVLIKFLDPKNSAFGIKEKSPEDKAAAEKQFDI*
Ga0114347_10036596	F006017	AGGA	MKFKVKSQLDHVEKGGILDDCGPSSTAAAVAWASKYTVDPSAGDGIKAKAKATGFVEKEGVSDNGSSLGDLIKTAKELGAKARYAKSWDDVVLSAHRGAGLIVWVQQAVDYPPVEISEWHKKWQNYWLKKDKKHIAQGYGHMTACGWDAVDGWQWACPTRSGKGKEKFGVVVTEDQLKQIAASKKKQTGGAPHKHVVIVEWK*
Ga0114347_10036597	F006467	GGA	VIRNIITDLIGGAWTVLGLLFAVVVLPEGQTQTTMATLFVLLTIGWLVTGPLRWKE*
Ga0114347_10036599	F026257	AGGAG	MTELAPVLTGCHVCRSPLVEAINKKMRDGLPDTKISEWMSDAGQYVSRITLGKHRREHLTEPHERLRQQAVNVMKKQSKTIKATGDLAGLVRDYVHSAVEQGLMTPTLAEGLRAQEMIDRRQEKGADREITLQLAGILGGTGAAYQVLEAREIKAVESGE*