Scaffold Ga0114347_1002835

Overview

Basic Information

• Taxon OID: 3300008114
• Scaffold ID: Ga0114347_1002835
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15781
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (62.22%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F000808	Metagenome / Metatranscriptome	882	Y
F001507	Metagenome / Metatranscriptome	681	Y
F003393	Metagenome / Metatranscriptome	489	Y
F003965	Metagenome / Metatranscriptome	459	Y
F005348	Metagenome / Metatranscriptome	403	Y
F011077	Metagenome / Metatranscriptome	295	Y
F018352	Metagenome / Metatranscriptome	235	Y
F084151	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_100283513	F001507	AGGA	MSDLIHKPYTIDELVTEIYEDNFSHFDFMENMNGGQCDCNLHITLDTIMQYWGN*
Ga0114347_100283519	F000684	AGG	MTLGGYTYQLGDLFTTSKTGITGRIVKFSPISSKLTRVSLQLANGQRRLAMVATTK*
Ga0114347_100283524	F003393	N/A	MRNKMKTVEKDDIIPIMDYVKVDVLTAGQLEVDDLILVDGEVVSIVEIISLPDGYTIEIINDFGEREVIEVEEYQQFDLMMLQ*
Ga0114347_100283526	F000808	AGGAG	MEYTYSLTTSYDGELVNTLRVSDMLEAVSAWTKCVDFGDAKEYATYNLSDPTGKMYTKTFYRNGEVVIR*
Ga0114347_100283527	F018352	AGGA	MAKVKEMLSTILTCSYCYGQGWQFVGNDVDFDVWACECNPYNIPADEVMAYHELFKTKENA*
Ga0114347_100283529	F005348	AGG	MINSVMAFDCDECNGQGLIFWGNDLDYDVEQCDCNDFALGNLFTTKEAE*
Ga0114347_100283535	F003965	N/A	MLGLFHKVKKERWSKMTTLVINEVCKVHTPNKSAISEVGDDQFTFCEVCEQNIERWYNDTDPERLPMWTSWKVSN*
Ga0114347_100283537	F084151	AGTAGG	MTITYAIWQGSNLLSINNIATNIKDVDKIIKELNDSDVANKVKFSANIQKVEVSK*
Ga0114347_100283540	F011077	N/A	MIINDNLTWADEAEGVWKGWTYSRSRNRYFFDDVGNESIAELWNDPFLNQAFESEGEK*