Scaffold Ga0114347

Basic Information
Taxon OID	3300008114 Open in IMG/M
Scaffold ID	Ga0114347_1002747 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10883
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (50.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10883

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (50.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F006543	Metagenome / Metatranscriptome	370	Y
F008812	Metagenome / Metatranscriptome	327	Y
F012108	Metagenome / Metatranscriptome	283	Y
F035281	Metagenome / Metatranscriptome	172	Y
F036210	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_10027471	F035281	AGGAG	MKNFVIAAMLVLGMVGSSYGGECVNGSCLLRSRVVNVTREVISVPVTVTRRTV
Ga0114347_100274721	F008812	AGGAG	MIQWIGVIIALLGLAYNGVKDYQKGDIKIPQLPQKQVLTKPVYPVQYCLMAYDPNVNKVFYLHENGQWYDYAPQQRRYASTQEHYQNQGQATLGSQHGSQGGSGQHYLR*
Ga0114347_100274725	F000325	AGGAG	MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLDNGCYAEQTEKQYKNARTAGFANVITEKHKIRAMILDAKRREKSIRWHERGDWFLNGELDLEYVANVTWACESILADGDTLPNMWFYTHIYDSRLVSLEKYMAVYASVHDDNDMNEAKSKGFKLFAWCDSDMKIAPKRPKHKAKADLWRQALPKLVVLNAAKFVVCPEIRRGRSVITCTGTKDSISCDMCVKGLANVLFPAH*
Ga0114347_100274728	F006543	N/A	LEIVTLFGESKMKKFSFAVDIVADTLDRDTVVESIRECLSGSLPGDVHANVKAGEVKAFSEQGYKVWRARVTGVTAEQAGDAHNAKVEAEATA*
Ga0114347_100274729	F012108	AGGA	MINLQLSVREAMNLATNCNLEIYERIVTAFEVALGVNQRCTVTITGGMTLDNRIKCIKAIRHHSGWDLKTAKDWTDVLVGGWKYDKFVPSSVGAKQSITLKTPEAAENLLRDLVEEGCEGFLS*
Ga0114347_10027473	F036210	GAGG	MKTRYLNARNRSEIQRKYIDHILGTLDFMEIKDRLRDYFELEKDKESNASLEAEIRQEAPEVLVDNWEDLDEPSTLTKKEEFHHA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114347_1002747

Overview

Ecosystem & Geography

Associated Families

Sequences