Scaffold Ga0114347_1002183

Overview

Basic Information

• Taxon OID: 3300008114
• Scaffold ID: Ga0114347_1002183
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26002
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (84.21%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001143	Metagenome / Metatranscriptome	766	Y
F041756	Metagenome	159	N
F051078	Metagenome / Metatranscriptome	144	N
F056333	Metagenome	137	N
F101020	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_100218322	F101020	GAG	MNQVIKTTEGYMVLMSDETYACDAQGNNTWDTFNEARDVLFTLTVTKQEQTARIFGQHYAYVHPSYTKHWERKEIASTFYTPKSKVWYAFIRGMERHEQFPVIAKGAKADIRGVLKNLTESADKYIEDGTWIEALSKDIADAKYIMEHNL*
Ga0114347_100218335	F056333	GGA	MTELNREEIEAVVAQELEFLLRWESSLPEPSQDTELIKAAMRVLQEFKVIK*
Ga0114347_100218336	F001143	AGG	MSAWLIAVVGVVYTVVAIDLLLKGSTGLGIAFVGYALGNVGLYMEAAK*
Ga0114347_100218339	F041756	N/A	MKLHELEDLIMAAWMTREDIDSVLWVLMDRVKKPDEDEISNLLIGLHSLHDARMTKLFQGYDTVLKTNKVIYKGYDILKNPPTL*
Ga0114347_100218348	F051078	AGGA	MDSSTSLKPNDIALILRPTIVDGVYQKHFQVLVSGFGPLTISEDDINNLIGMATILAATVQYMEEDEQLANKLVEYCGKMFADVGDFFYNADHDSFGDGNFTIDTKTVGGIQ*