Scaffold Ga0114347_1001476

Overview

Basic Information

• Taxon OID: 3300008114
• Scaffold ID: Ga0114347_1001476
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46166
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (23.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027117	Metagenome	195	N
F039526	Metagenome	163	N
F064428	Metagenome	128	N
F066465	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_100147655	F064428	N/A	MLAVKKLLDKLIKPKHPNIIRIDVRAYDTDRIGSIPHVYVYLKDHDDEDELNIDWEIKDVLRYLSIKNHMIRFTLGDDDSASL*
Ga0114347_100147662	F066465	AGAAG	MNLQEQVNRIQEMMGLNESNFLSAVQRRIRNVDELIFVSADEVNVQYSICEIDEDEFIEATISKTLDTIYWDYFSDVKSSSPEWGEASKMMDKYARDKYGEKLRLMHQYVCP*
Ga0114347_100147663	F027117	N/A	METSTEMIERVLEHLVSPKWNGIVEYKIEPSTHDDTGVLYYMIDVIFDIDTYWETLYSREYGHSSEMDEDISDNVRTAVKYLGINNVIVEIYVRNEHGFDIN*
Ga0114347_100147673	F039526	AGG	MIIPPFIKRRAIQIDDYITQRLIDHPYYLVSQHVEGYLNRMTRDVSEWFIQTYDFSHGFPTDYYKRVTEVIPFIKYLIRTKVVSHWETMNNKVIDLEIK*