Scaffold Ga0114347_1001457

Overview

Basic Information

• Taxon OID: 3300008114
• Scaffold ID: Ga0114347_1001457
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22769
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (22.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018511	Metagenome / Metatranscriptome	234	N
F034112	Metagenome / Metatranscriptome	175	N
F060725	Metagenome	132	N
F064518	Metagenome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_100145710	F034112	AGGA	MVIFNIGNKAVRYEYPETAADITLEQYIYFIKFLLPQHPKAELEAIQYMNERDTVYEKIKPYARKLKVSTKDENQATVVRQLNTILETNEVKDNVRRFLPALITQWETNNEELRIRLEIMDKVWESKERYPYMAKVVSYFTGIPLDACFGRVANSLELKYLVYIYTKIMNAINTPTETTYKQLYDFNGKVYTLPEKLMEKSTLLEFTMAAQYDKAVKQIQGGEAEGLLNVMAVLLKPLNEEYSDELFEQNKIDFLQMPLQTSFEVAFFLTKLSEKYTLGLQTSMLQRAMENLN*
Ga0114347_100145711	F064518	N/A	VAESGLFNLNGFTPMESAEKAKLYQVFQYLASKAAEEKVIDDISKSKK*
Ga0114347_100145715	F060725	N/A	MIKLFIGGQEVDLNQDEVNVTIDYSIENLDLGNISGAHSKRNVTLPATKTNISIFQNITDAGAIVTSAYKLLSARLEADGVPILTGKARLEGADLQAINSGFLASSFKVSLIGNNADWFADVGNILVRDLGWDDIEINTANVKTNYDPLTSEHCYILMKWKAWANETYIVNNEMTPAIFIWQILEKAFSNKGYQLNSIFKTDPFNRLIIPMGLELGADYLKDFVNLRASIPSPGLFSAFEPSPVLITFTDETTSPNFDTGGNYSSGVYTVPITATYTLKAELNILITFYTPTPTSELLVGWEINGIFEEGEDLSQEADFDDSVSIEFLTDLVEGDLVRFVVIHNNAAFNMNLNGSIDIIGSKAVFETGRTFDLQYVIPISWYVRDVIADLTTVFNLAWETNVQSKQVYAYPKDDYTIRYRADATGAISLTTFEGFFKGSDKYDLNTRDLDGSEFQILDGYKSSQVLAYATDDDTTNKEEARRGVNIYSGGYNFPSDRFDNGVEFIYTKFFAKTIHISDVDITSGGIYGAQMPLLFGDDYNTVTDAEPNYNLAPRLLYYAGRRSGLDGYIRLYDEASSAASAFDFPAAFMVNYNDPSGGDFNLSFSDEVTNYTNVMQGIFKTFHLQTYKRIELGKVYTTFAKVKPKDITQLSFRRKGIIGSSNFIIQSIEYNPKSNSPAKTVLLYDEKPNVNDLTKVSNTITLAGSTPQSGTVTGSGSGLVGANGATVNIQLSYTPFINSMTNVLILSPNSGITQVSNTNANVLVFQNGQKLIPTIQYIISGSTVGINVNTHYDGANYEVVVNGVTKG*
Ga0114347_100145717	F018511	N/A	MKVDSIWAELATRIPEEYKTQVMAAVDRTYRVLSIDPVDMDYLFHIYNNFVNHYEPERRNCPACRTKVVGKMRQIVQYWRDGNQ*