Scaffold Ga0114347_1001294

Overview

Basic Information

• Taxon OID: 3300008114
• Scaffold ID: Ga0114347_1001294
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17249
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (84.85%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001094	Metagenome / Metatranscriptome	780	Y
F001477	Metagenome / Metatranscriptome	687	Y
F013279	Metagenome / Metatranscriptome	272	Y
F014590	Metagenome	261	Y
F044984	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_100129424	F013279	AGGAGG	MIYYYRCGQCGEGLSVERSIHEDAKDPGCFDCHVPMSRVYDAPAITFRGRGFYTTDK*
Ga0114347_100129426	F014590	GGAGG	VRTRHLQLVTHEHSVTTSERESALSPYGPVRAGLTTWQTTQDQQLTELLNSLESVVDNLNFKSFTVYDTLVTAIEGVRVALSATPIDEDGTKK*
Ga0114347_100129427	F044984	GGAGG	MEDASRRTQTATRKAIRDRNYRRARDRALVRLAHLYPDTYKQLLEMEKIEDEKQGKNWISIDGSTVLSMGVHTRATGADNLAHTSNEGTNQSYNGGEA*
Ga0114347_100129428	F001477	AGGAGG	MSNVYTIHPPKSDLILFYEVVEKDGANTWGGANAGQAIQWLVNSPTGSRILVSAWDSDEEDAHLVGQTLDITEIVKAASL*
Ga0114347_10012948	F001094	AGGAG	MNKKKLEAMAATYLRAGIAAVIALWLAGVTDPKALATAGIAAIAGPLLKALDPKATEFGRGSK*