Scaffold Ga0114347_1000817

Overview

Basic Information

• Taxon OID: 3300008114
• Scaffold ID: Ga0114347_1000817
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21993
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (90.70%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003212	Metagenome / Metatranscriptome	500	Y
F011484	Metagenome	290	Y
F016784	Metagenome / Metatranscriptome	244	Y
F020684	Metagenome	222	Y
F023834	Metagenome	208	Y
F093528	Metagenome	106	Y
F095162	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_100081716	F095162	GGA	MTDEKRMASAAKAAVYYRNYRRARDRALIKLSHLHPEDYKELLEKEKVSDEQEGKTWIDINGNTIEPIIGTRTKARGTTFTQADTNQGNDGGKA*
Ga0114347_100081718	F093528	AGG	MAEDTITHVITLVVQAGQKWNKVELFDFSGGEPTPLAAGEGSNWRTALGEALSKISLSSDTPAVEKTINDIIKENVEGQGENE*
Ga0114347_100081719	F023834	AGGA	MGDSVMNKEYWQAKADLCRDLALIQIQEEETEKEAGMNLMRMTYALSMIDTYSEGKGE*
Ga0114347_10008172	F016784	AGGA	MEFNTYQEVKPEFREVIATSEYAAHYWFEQGWKACRLAFLLHDQAEKAKL*
Ga0114347_100081721	F003212	AGGTGG	MKDKWLVTLEIETYDGDPRQWDWGNLYIGEEDIKIISTDFKGRVLPTEGKGE*
Ga0114347_100081724	F011484	AGAAGG	MKELEQFLNVEAEWVLERLSTGTESSDRNYYQGRLDQLAQVRRLLNLPQIMRGEG*
Ga0114347_10008177	F020684	AGAAGG	MVMSKYALTIEEEATCVEVGYQRQKPYFGDPTKNINYSEGDLWETWQHVVCAGSELAFARMVGKNDFTPHYNKWKSELDIPGFGEIRYSFPPVRGMRYSTRDDDNLVYVLMSDGLCHKTRRNAPDWKGPEYTAIGWKLGSECKRDEWKYNDRTWYVPVIYLNSMESLILNG*