Scaffold Ga0114347_1000809

Overview

Basic Information

• Taxon OID: 3300008114
• Scaffold ID: Ga0114347_1000809
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23005
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (23.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014605	Metagenome / Metatranscriptome	261	N
F048316	Metagenome / Metatranscriptome	148	Y
F096906	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_100080923	F014605	N/A	MKVNLAVAVTDIEGNKIPNEKGEEMHLSKLVGNALFTAEDKDDPIRVYELAKKIYYSEGEIEMTKSDADLIKDKVKAKGFTVLILAPLYEALSEK*
Ga0114347_100080925	F048316	AGG	MRRFFSWSKGFLSENGEASSKRLVGVISAITLSYTLIRNQNEPLIYSVAALSAAALGITAAEKIFKKPNNEDKS*
Ga0114347_100080929	F096906	N/A	MEDKERIKIAIISFLVGIILAFVVFPRPEMETVYKFETKVKTDTLFVNSRDTVYVPKNKIKTQIVRDTILIDFKPKISLFETTFPFDYGSTKVSGEVLGEVLKMTATSDYSLPVVTNTITETKTSKKLF*