Scaffold Ga0114347_1000645

Overview

Basic Information

• Taxon OID: 3300008114
• Scaffold ID: Ga0114347_1000645
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35417
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (48.65%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020538	Metagenome / Metatranscriptome	223	Y
F074413	Metagenome	119	Y
F075706	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_100064512	F020538	GGA	MIPIPTGCARFLCYGWIITAICFLLGLNKNGEDLSGAGAFAVITGLLGLYVTRPRKD*
Ga0114347_100064515	F074413	GAGG	MTEPRFHNCYQDEEPGLSPKSTRLVFKAAIFHGSGHDELQRIRIGSDDEGKWDVLWLSADWGEGTVPLAWVAKGTLRGRALWTGLVHAWFLGSKLGQDAEAPPYDEYTSADHALLDEASVHAIVEQVWPVEEEDETEGAE*
Ga0114347_100064519	F075706	N/A	MNSFSDWDDVLAISAIREAAVAYAAQEAPEYLEESPEGVMVIGEDDYPYVLERAIKDVGECVFYFSRGADDQIQDHTHRRFAGKYFECDGAGQIGGPYDDNNADIILDLLSDAYEAGCVASPASGATVSVGGDFPDDYFVKLCVSLVPLGQQIEINSTLYVRTKSGLVAQ*