Scaffold Ga0114347_1000510

Overview

Basic Information

• Taxon OID: 3300008114
• Scaffold ID: Ga0114347_1000510
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31693
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (24.53%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F005529	Metagenome / Metatranscriptome	397	Y
F008081	Metagenome / Metatranscriptome	339	Y
F014605	Metagenome / Metatranscriptome	261	N
F034147	Metagenome / Metatranscriptome	175	Y
F034898	Metagenome / Metatranscriptome	173	Y
F048316	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_100051014	F008081	N/A	MDETQVLNPFGYGNASRVIDENRKPAEWYWDYLEFNEVFAENEFYVLFSDGLLVKKGRSKFRTSQYLKGERFTSFKKVYERL*
Ga0114347_100051016	F001775	GAGG	MRHLLDDERIRIAVISFLIGVILAFVVFPRPEFETVYKTEIKTETDTVFVSQKDTIYVPKTKIKTEVLRDTVLIDFKPKISQFNASFPFEYGSTNVSGEVLGEVLKMTATNDYKIPVVTNTITETKTETIIKKSKGIYLGANVNSLLQPSANVSYLDNKYLFSYQYQPLQRVHQIGVSKKLF*
Ga0114347_100051020	F048316	GAGG	MKRFFSWSKGFFSENGEASSKRLVGVASGITLCITLFLNQNEPLVYSVAALSAAALGITAAEKIFKKPNNENKS*
Ga0114347_100051023	F014605	N/A	MKVNLAIEIKDIEGNPLQGEPMLLSKLVGNALFTAEEKDDPIRVYELAKKIYYSEGEIEMTKSDADLIKDKVKAKGFTVLVLAPLFEALSDK*
Ga0114347_100051029	F034147	N/A	MAKYHSAPYKEGEIFFYPNLGALANFEDFTGQGIADAFSGQSIPKIEMIYALLIECHKVACVRKGTNPVTLEELKIWIEGKDVMKLFNEVLADLLLELGIGETQEKKI*
Ga0114347_10005103	F034898	N/A	MTKEEIVKELQFRATQKYLIYLALQEIMLDNYEDCTFLKDYDHDLTVKHKNIINSLKRNATKAFRFLEGYDEGEATIKQFHDFVKLFELIHEGIDRGGGVYNECLNAVEKILDKDAEIYGNGGGGNAKPLA*
Ga0114347_100051047	F005529	N/A	MAKQLPKSKPDYSLEIRYRLRDGQWSPWSNKGKGYFMSMEIVQRQIRLIAAAYQGREKEVKFEWNGKLCDFTGNPTGKVIELK*