Scaffold Ga0114347_1000475

Overview

Basic Information

• Taxon OID: 3300008114
• Scaffold ID: Ga0114347_1000475
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51775
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (74.03%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000220	Metagenome / Metatranscriptome	1544	Y
F005025	Metagenome / Metatranscriptome	414	Y
F033775	Metagenome / Metatranscriptome	176	Y
F042750	Metagenome / Metatranscriptome	157	Y
F046255	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_100047537	F033775	AGGAG	MGMQTDVKAISLAASGAVTDARTRVRGMVIEPGTSAGSVVLKDGGSSGTTVLTINTTANGETFNVVIPAEGVLFTTDAYAALTNAKLTVFYG*
Ga0114347_100047547	F042750	N/A	MDDCAVMEDGPCTCGTDEILEELALEDAGLTAEDFE*
Ga0114347_100047551	F005025	AGGAG	MDKKQVKAIADTEAKKMVKGHESRMHTKGMKAGGPTSMDRKMYGKNLSRAMNQKSGSK*
Ga0114347_100047563	F046255	N/A	MEQLMNDKKIELTLGLVNAVMQYLGTRPYAEVADMIQAIREQAIPQVPMPEEAKPAEQPLIQ*
Ga0114347_100047566	F000220	AGCAGG	MPNEKPNPDDTLSKVLAYVDSPFKLIAILVMGVVTFTGYFLWQNQELLVGAYRENQKMPSIAEDRIEDAASHLFKHTGAVVVAVFKVNPMFGTRVLHRAYTKEGRDKINDGLDVGLFTSNAANNRDVVALMAGEITCGSYTQAQSEIGLWYIEKGMTFGCRVGVPPDPSRFIGQITVGWAEQPEDMEKINNLLLIAATMLSRSKQ*