Scaffold Ga0114347_1000342

Overview

Basic Information

• Taxon OID: 3300008114
• Scaffold ID: Ga0114347_1000342
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33652
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (8.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004093	Metagenome	453	Y
F004112	Metagenome / Metatranscriptome	452	Y
F011226	Metagenome / Metatranscriptome	293	Y
F093875	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_100034226	F011226	N/A	MAKQIQPVNIWINGENKVGEFFQVTCINDNYENSATNYWQIFTKVVDEEGNEKQGEQISCGNLTIDGQDYVNWGDQPAMAINAWIYDWSASKLSLVII*
Ga0114347_100034228	F093875	N/A	MIGETNLMPIKKGDTYIIPFEFYSDECESTPINVSTYIFKLMAKNSAGVTQFTWNNADFVSVATNKRTVTLSYTTTAGYTAGEFKYELQVDTGSGIYTWMIGYIEVQDQITS*
Ga0114347_100034234	F004112	N/A	MLLPNDFYAMSPHHFSLMIKGHQDKKVDTYRQTRLLMYTMVRLMGDPKSAPKSPEELWQLPGDEENSGALNDDDIKELFKRLA*
Ga0114347_10003429	F004093	N/A	MIYQTIHEIMNPFDVDTPLGYGVALFMISGSIHSNPQFIVRFYHSGEVRTIDQNDIRIYGNPTTGEKLKP*