Scaffold Ga0114347_1000108

Overview

Basic Information

• Taxon OID: 3300008114
• Scaffold ID: Ga0114347_1000108
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62608
• Total Scaffold Genes: 87
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 77 (88.51%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000220	Metagenome / Metatranscriptome	1544	Y
F001354	Metagenome / Metatranscriptome	716	Y
F007517	Metagenome	349	Y
F008614	Metagenome / Metatranscriptome	330	Y
F017452	Metagenome	240	Y
F027821	Metagenome	193	Y
F034467	Metagenome	174	Y
F052582	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_10001082	F000220	GGA	MSDEKPADVLSKVLSYVDSPFKLFALILMAVFAFAGYFVWQNQELLMGAYRESKKMPSIVEDRVEDAAAHLFKTTNATIVAVFKVNPMFGTRVLHRAYTKEGRDKTNDGLDVGLFTQNQANNADVIRLMASEIPCGEYKSAQSEMGLWYIAKGVAYTCRVSIPPDPSRFVGQITVGWDNEPADIQVTRTMMEIAATMLTRSKQ*
Ga0114347_100010824	F008614	AGGAG	MGMQTDVKAAHVEATGTMVSGRNRLKGYHCISGGTAGDVIFRNGGASGTVLLQFNIGTGTQPITMPIPGEGILFATSIHVTLPATAKITAFYG*
Ga0114347_100010831	F007517	AGGAG	MTTMLEVLNKKLDEQVKQLVDVVSGGGAKTYDHYKELCGTIRGLQTAQYELADLVRKTKEYEDE*
Ga0114347_100010854	F034467	GGA	MKELKYLSRALPTRMCTDPKFKFRNASQTDVRRTWRKARLLMRLAKGNPYESLT*
Ga0114347_100010860	F052582	AGGAG	LSKSKTPEPLYRQIIPEEDRGKTVVSKYYRVSQNRDGLGVGLHPYLVERNLRIDFGLDGGIYKVEWSNKVLGERK*
Ga0114347_100010861	F017452	AGGAG	MIHTDEDDEFERIAHEAEMKKGQPYHYDVFVSPSQRNTVLEEVAKEFDAMKPFGDTAASFAAFVRGMKK*
Ga0114347_100010863	F027821	AGGA	MTIDNSTGKNKEFYELGQRMFDRLKPLKPIKPYFDTIQEDIDLLYEANSADVEALEDAKITLNVIKEVDPGVYDEIIDSSLVLIEKALSMSYGDAMERVTNRAKEKK*
Ga0114347_100010887	F001354	N/A	MIAEDRAEDVVAHLFKNTDATVIAIFKVNPLFGTRVLFRAYTRDGRDKTHEGLDVGLFTQSASNNRDVVALMANEMPCSEYAFAQSEIGLWYIEKGVTFGCRVSVPPEQGRFVGQITVGWAKEPDDLNKAKGMLQIASTMLSRAKQ*