Scaffold Ga0114346_1083219

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1083219
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3409
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F013279	Metagenome / Metatranscriptome	272	Y
F015702	Metagenome	252	Y
F083706	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_10832192	F013279	AGGCGG	MQYDYRCPDCNSELTVERSIHEEPREPSCFDCHIPMVRKWDSPAITFKGKGFYSNGG*
Ga0114346_10832195	F001477	AGCAGG	VYTIHPPKSDLILFYEVVEAGGENTWGGADAGQAIQWLAHAPVGSRILVSAWDSDEEDAHLVGQTLDITEIVKAASL*
Ga0114346_10832196	F015702	AGGAGG	MTIKEVELEYTVYNLVRLSEKVWGENAIEYLAGRLESVITYNQMKALVDRLKEEAGE*
Ga0114346_10832197	F000821	GGAG	MNEEYLKAKFDLCISEADLQQEEIARAIKNLERANSALSQLFGFEEETDDN*
Ga0114346_10832198	F003212	GAGG	MKEKWLVTLEIETYDGDPKSWNWDNLYIGEEDIKIVSSDFKGRVLPTSEGESNE*
Ga0114346_10832199	F083706	AGGAGG	MEHLTPRGWLVVGILIGLSTWGLWEVASHLLWTGNGWEWCESLLECEREGK*