Scaffold Ga0114346_1066868

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1066868
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1735
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013514	Metagenome / Metatranscriptome	270	Y
F047662	Metagenome / Metatranscriptome	149	Y
F049575	Metagenome / Metatranscriptome	146	Y
F057309	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_10668681	F047662	N/A	MHYETDIIIHQYSSDGDFYYKLKVTDVMNMDYYYEGSALTLDNVMECIQLH
Ga0114346_10668683	F013514	GAGG	MSINLEEIQKFLNDNNITLEEYLRENMITDEDRKYFDKIWMDAIYKNLGEDT*
Ga0114346_10668684	F057309	N/A	MMNPLLQKYEELYGKKEKPKLPRIEDYEGEETFADELKKSKPPTLKSYDLDDLKASFQQVAEQLQNDKAQVVSMNMEFGDHMNKMTFEVYVYKP*
Ga0114346_10668686	F049575	N/A	VGGKEMTKLSAADLMVIHNTLYKSLNVVGNSIWTQETRERVMDKVSVIMEQMNAEVVCGDVEPIVVSGDLGG*