Scaffold Ga0114346_1053053

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1053053
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2013
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015339	Metagenome	255	Y
F020904	Metagenome	221	Y
F049636	Metagenome	146	Y
F073534	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_10530531	F049636	N/A	MTGKEALDKLEDGFTLRRISWEPDIKCRAYFSDVKEAPEYVPNKPEFEGYISYFDCLDNGDFLED
Ga0114346_10530533	F015339	GAG	METDFRILDEQYVRGRIWSFTRFHKYLREIAYIFCEEFQYDKDDIVEVSLSDDGKTVWVHFDSGTIGFASELLWDKNVRETFKKNFEVD*
Ga0114346_10530534	F020904	N/A	MDKLPKNQKYFYDVEIKKAKLNKAALNYIDPGEDYLPYAVENKHIGSNFDSFLKTNNIELKRDINWAVKMLNAGKMMSREGNPSLTLFPKKYDHAESTITTEDLFAEDWMVVQSKSFKDVLEDLYAGKTIRRKSWHPDWGVGKYARYGKIIYLDLIADDWEVVDVVAEVDKIQKDLKDGKI*
Ga0114346_10530535	F073534	AGGAG	MFNFFNKKLPTDFDQVKDKGREIGEIFFKPTQELQQDFNLIDKVNKSRFEDFQVSSFASFFEKLELIPTVDLGDVNLKIRTTNPSAPIDADLCQVWMRRTYTNPTTGQTTEQWINWVPNDDAAKKYFKFSLFSGETQTFNFDISTFDVGKYDSFRFIFFTNHWDVLADQSAENVSF