Scaffold Ga0114346_1042150

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1042150
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2327
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007525	Metagenome / Metatranscriptome	349	Y
F016662	Metagenome / Metatranscriptome	245	Y
F070119	Metagenome	123	N
F071246	Metagenome	122	N
F082675	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_10421501	F071246	AGGA	MGKSQTENVADKIVALLADARISQAQWRLWIPRRITEHNKMIIANAKNLADGINEVIADEQITLSKEL
Ga0114346_10421503	F070119	GGAGG	MNLNSYSAFDFVIPNCLEPGDIIQWQEEIYTVKSFDLLSDGFIIYAIDEMEDDVELLIPDNTILSLMEEQ*
Ga0114346_10421505	F007525	AGTAGG	MKTLEGVTVEYTQTIPTSKQMPEFYVWQEGYESYATITYLDRVVEIERGGEMHLTIPNLVNGELTDEYGVIVRYSDDLEAAGINDDIQLMQFIKTISNAGFEVYRMNPWWELFAHNDDMGEVYETFYEAVDAGIDYILDDKGWD*
Ga0114346_10421506	F082675	N/A	VWQGRLSNGFRRSGSMSKQYHWVVVYDEDWGAFMVDAEGELLDRDRLLYNKESGKWEYLEEDSVEEAEYYRLEEILAYNITRLDLTKKV*
Ga0114346_10421509	F016662	GAGG	MVFIVATTEVIYQEEYLIKAMLATGEYGVHGHPISHEAIVEFIKDREWQIEHSLFLDKFDIPAQISIKDEDGTDLFFARNKYEILDNYPQV*