Scaffold Ga0114346_1037287

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1037287
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4201
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015080	Metagenome / Metatranscriptome	257	Y
F048940	Metagenome / Metatranscriptome	147	Y
F058096	Metagenome / Metatranscriptome	135	Y
F082582	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_103728711	F058096	N/A	MNAQLSIDECKVMWVVGALQRLATLGMIGPDIPLKLTPEAVDDYLEIDNHRNILFESDFEIASIFTALAKDECEDEPEPDDVEAIIDLILEYKNNRTEIVKFALSHRTI*
Ga0114346_103728715	F082582	N/A	MTVDFSKDVMLGMLRKGVTGNDILNILDVIVPDEVSQTVEMTREYVCEQLGIADCPENDDEIAAYLAAV*
Ga0114346_10372878	F048940	N/A	MTAAQRMEKQFFINFITLVNEVQGKQKLPSQVVVNRKSAWVKQIQNPKQKKDALTLV*
Ga0114346_10372879	F015080	N/A	MFDLLNFQPHPNGIVNAIQARHKFENDWEISVVAGPPNCGLYGNINENTYEVGIFRPNGNLTEDVSGWNTKQEVSAMMWVLSQL*