Scaffold Ga0114346_1030232

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1030232
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2843
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000671	Metagenome / Metatranscriptome	945	Y
F073544	Metagenome / Metatranscriptome	120	Y
F077310	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_103023210	F000671	GAGG	MEKILCYSCNKTKNKLNVRKSILIPINLLMCETCISSKLEPRWVVIIAGRQLGPDSVKEFIVKKRYLGSDIAASELFV*
Ga0114346_103023211	F077310	N/A	MTLDANSIFIVIIASILSGIGTAFVGGIKDAKREKIRQAEREQDILRMELKDLEIKLYKLERDLIEWRDKYYQAVQELIEVKAELEDTLIKLSHINIHE*
Ga0114346_10302329	F073544	AGG	VREYYEIIKIVFIHSERVYGSVESLGLYASKVKYQKDGIEIEEVIENDDFTVMDEIVFEHIEESE*