Scaffold Ga0114346_1030099

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1030099
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6345
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031359	Metagenome	182	Y
F048799	Metagenome	147	Y
F080877	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_10300991	F080877	N/A	LERDLDPPSPQEPLRIKSWGIGYRWEDGSEDTLHLEDHQRDAIDEIERTLDEVEYEVNRDILEHQAQKYGDPDGDY*
Ga0114346_103009916	F048799	AGGA	MIKSKNLLIKQGTVYGVKHPLKTTVAGARLSAVTNLKNTQNKRRTFVQKANLNNFNPSARQAIREFETWQLKVFAKNAKKGWRFFQPDSLDKPTPRSSYEAWGTQYKRDEFEKNEDRNQKIMACIFVVVLLVLSII*
Ga0114346_10300992	F031359	GGAG	MVTTEKKQKQIIVEQVVVTGYVKHANGRRSPFAFNKTDFEAKDLQSILDGVGRMYQ*