Scaffold Ga0114346_1015753

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1015753
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4169
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007518	Metagenome	349	Y
F028744	Metagenome	190	Y
F031377	Metagenome	182	Y
F039000	Metagenome	164	Y
F045551	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_101575310	F039000	AGGA	MGKLPYKPDKQIEEIMDNAQTLLNFCGNTFAKPSEAWYACLVSSAILTAELDVPVEVFLEGFEHAYKDAVKAKAKTGPSYDH*
Ga0114346_10157534	F007518	GAG	MTDWTREEDEAFNDVEKHSNLGKQILKDIEGQPYHYDLYVSPMQRNLVLEEVAKEIEKMTAFNPDTIDSFAVYIRNMKT*
Ga0114346_10157537	F045551	AGGAG	MTEQRELEILRPYVTECGKLVDQNFKLEKHLKAIDRLLLEVLMGDIDPMQAMINRQKIKDEYEQT*
Ga0114346_10157538	F028744	N/A	MHEFLYECDELGLALKCFFEYEPAEVGSIEPMSGLKLEPDYPEVWTLISVFLPNSNVDLSGVLHPDVISRVEKDAATYFEEKREEKYYD*
Ga0114346_10157539	F031377	AGGA	MITNAHEFTSVSGTNGRVTPFNTGKVQIGLLYQPKPPEMTSSEELVQAALMGWSSVHRPVPLWPVTLGSLIVGFLIILTVG*