Scaffold Ga0114346_1015400

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1015400
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4224
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000852	Metagenome / Metatranscriptome	860	Y
F007691	Metagenome / Metatranscriptome	346	Y
F084239	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_101540010	F007691	AGG	MTAEQLIELIYEDNFSHVDFMDNMGGDCDCHIHTTLITMAKYLGIEVNA*
Ga0114346_10154004	F000852	AGGA	MTTKREYLKQQGITVGVRGRFSGAAKQVLQEAEAKGIKFSAEKPEKTSK*
Ga0114346_10154007	F000263	AGG	MTPDYNVPAHLQRMIDAGVNGLDIMHGELKNLMFIAERDLDIAIKAEEESEEAMDSMERTRCEGILDTLVDLYNLTYQLSFAIAERDKNETV*
Ga0114346_10154008	F084239	GGAGG	MTRSSRFMEYLKIYKISLEQDLEQIDYVNSHHFYRVKEAEIKTVEHILSVATDIMNSSNERYN*