Scaffold Ga0114346_1013582

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1013582
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8127
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F010618	Metagenome	301	N
F021296	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_101358211	F002406	N/A	MENLKWIRAMADRLRDELSKEYDDETKDLIIRAFMQGLFQQPGIVEELKSSSLIESDYFEGEDEATN*
Ga0114346_101358212	F010618	GAGG	MSIQELIKKLQEIEAKYPQYSQDTEVVMAVHSENDFNPEVQIDYIDEVVHQALDTHSGYICRIVLCGEYYQED*
Ga0114346_10135824	F021296	N/A	MEEPIMSDNKFSFLELDDAPVKVQPNQSVFTAVQSLQPKDGATAKQDANGNWVNAIGLQSTATHRHVAKVWQDKCSPLADFIETVKEQSKTKFDYVKPESDVRLQDASTLTNGMTLTKSGLNSLRSFTDIPSSMVSFLEERGYDEDLTRFVNSELNRREQNWKDDGKESREFRVRVRQDDNGNDAVRAVVSGRYGVIDNHEAMEMIANSLPSLSDALASHISNDGDDIFGNVLLPDYMKSEPDSDYGVGIAFRNSEIKNSTF
Ga0114346_10135829	F002398	AGG	MTTLISSLIILSLSLEPIKNFVSLKTYISENAKIHCHVYFINEEIPDFPRVNIIEKSQGDFFAYLDTIGIEHTKLGSYYFFQKKQQ*